DeepReg
v0.1.0b1
Getting Started
Installation
Quick Start
Tutorial
Image Registration with Deep Learning
Design Experiments
Custom Functionalities
DeepReg Demo
Introduction to DeepReg Demos
Paired Images
Unpaired Images
Grouped Images
Classical Registration
Documentation
Command Line Tools
Configuration File
Dataset Loader
Experimental Features
API Reference
Entry Point
Dataset Loader
File Loader
Network
Network Backbone
Layer
Loss
Optimizer
Contributing to DeepReg
Guideline
Set Up
Send a Pull Request
Add a DeepReg Demo
Packaging a Release
DeepReg
»
Index
Edit on GitHub
Index
A
|
B
|
C
|
D
|
F
|
G
|
H
|
I
|
J
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
U
|
V
|
W
A
Activation (class in deepreg.model.layer)
add_ddf_loss() (in module deepreg.model.network.util)
add_image_loss() (in module deepreg.model.network.util)
add_label_loss() (in module deepreg.model.network.util)
AdditiveUpSampling (class in deepreg.model.layer)
affine_forward() (in module deepreg.model.network.affine)
B
build() (deepreg.model.layer.LocalNetUpSampleResnetBlock method)
(deepreg.model.layer.UpSampleResnetBlock method)
build_affine_model() (in module deepreg.model.network.affine)
build_backbone() (in module deepreg.model.network.util)
build_callbacks() (in module deepreg.train)
build_conditional_model() (in module deepreg.model.network.cond)
build_config() (in module deepreg.predict)
(in module deepreg.train)
build_ddf_dvf_model() (in module deepreg.model.network.ddf_dvf)
build_inputs() (in module deepreg.model.network.util)
build_model() (in module deepreg.model.network.build)
build_optimizer() (in module deepreg.model.optimizer)
build_pair_output_path() (in module deepreg.predict)
C
call() (deepreg.model.backbone.global_net.GlobalNet method)
(deepreg.model.backbone.local_net.LocalNet method)
(deepreg.model.backbone.u_net.UNet method)
(deepreg.model.layer.AdditiveUpSampling method)
(deepreg.model.layer.Conv3dBlock method)
(deepreg.model.layer.Conv3dWithResize method)
(deepreg.model.layer.Deconv3dBlock method)
(deepreg.model.layer.Dense method)
(deepreg.model.layer.DownSampleResnetBlock method)
(deepreg.model.layer.IntDVF method)
(deepreg.model.layer.LocalNetUpSampleResnetBlock method)
(deepreg.model.layer.Residual3dBlock method)
(deepreg.model.layer.UpSampleResnetBlock method)
(deepreg.model.layer.Warping method)
cauchy_kernel1d() (in module deepreg.model.loss.label)
close() (deepreg.dataset.loader.grouped_loader.GroupedDataLoader method)
(deepreg.dataset.loader.h5_loader.H5FileLoader method)
(deepreg.dataset.loader.interface.FileLoader method)
(deepreg.dataset.loader.nifti_loader.NiftiFileLoader method)
(deepreg.dataset.loader.unpaired_loader.UnpairedDataLoader method)
compute_bending_energy() (in module deepreg.model.loss.deform)
compute_centroid() (in module deepreg.model.loss.label)
compute_centroid_distance() (in module deepreg.model.loss.label)
compute_gradient_norm() (in module deepreg.model.loss.deform)
conditional_forward() (in module deepreg.model.network.cond)
Conv3d (class in deepreg.model.layer)
Conv3dBlock (class in deepreg.model.layer)
Conv3dWithResize (class in deepreg.model.layer)
D
ddf_dvf_forward() (in module deepreg.model.network.ddf_dvf)
Deconv3d (class in deepreg.model.layer)
Deconv3dBlock (class in deepreg.model.layer)
deepreg.dataset.loader.grouped_loader
module
deepreg.dataset.loader.h5_loader
module
deepreg.dataset.loader.nifti_loader
module
deepreg.dataset.loader.paired_loader
module
deepreg.dataset.loader.unpaired_loader
module
deepreg.model.layer_util
module
deepreg.model.loss.deform
module
deepreg.model.loss.image
module
deepreg.model.loss.label
module
deepreg.model.network.affine
module
deepreg.model.network.build
module
deepreg.model.network.cond
module
deepreg.model.network.ddf_dvf
module
deepreg.model.network.util
module
deepreg.model.optimizer
module
deepreg.predict
module
deepreg.train
module
deepreg.warp
module
Dense (class in deepreg.model.layer)
dice_score() (in module deepreg.model.loss.label)
dice_score_generalized() (in module deepreg.model.loss.label)
dissimilarity_fn() (in module deepreg.model.loss.image)
DownSampleResnetBlock (class in deepreg.model.layer)
F
FileLoader (class in deepreg.dataset.loader.interface)
foreground_proportion() (in module deepreg.model.loss.label)
G
gauss_kernel1d() (in module deepreg.model.loss.label)
get_data() (deepreg.dataset.loader.h5_loader.H5FileLoader method)
(deepreg.dataset.loader.interface.FileLoader method)
(deepreg.dataset.loader.nifti_loader.NiftiFileLoader method)
get_data_ids() (deepreg.dataset.loader.h5_loader.H5FileLoader method)
(deepreg.dataset.loader.interface.FileLoader method)
(deepreg.dataset.loader.nifti_loader.NiftiFileLoader method)
get_dissimilarity_fn() (in module deepreg.model.loss.label)
get_inter_sample_indices() (deepreg.dataset.loader.grouped_loader.GroupedDataLoader method)
get_intra_sample_indices() (deepreg.dataset.loader.grouped_loader.GroupedDataLoader method)
get_n_bits_combinations() (in module deepreg.model.layer_util)
get_num_groups() (deepreg.dataset.loader.interface.FileLoader method)
get_num_images() (deepreg.dataset.loader.h5_loader.H5FileLoader method)
(deepreg.dataset.loader.interface.FileLoader method)
(deepreg.dataset.loader.nifti_loader.NiftiFileLoader method)
get_num_images_per_group() (deepreg.dataset.loader.interface.FileLoader method)
get_reference_grid() (in module deepreg.model.layer_util)
global_mutual_information() (in module deepreg.model.loss.image)
GlobalNet (class in deepreg.model.backbone.global_net)
gradient_dx() (in module deepreg.model.loss.deform)
gradient_dxyz() (in module deepreg.model.loss.deform)
gradient_dy() (in module deepreg.model.loss.deform)
gradient_dz() (in module deepreg.model.loss.deform)
GroupedDataLoader (class in deepreg.dataset.loader.grouped_loader)
H
H5FileLoader (class in deepreg.dataset.loader.h5_loader)
I
IntDVF (class in deepreg.model.layer)
J
jaccard_index() (in module deepreg.model.loss.label)
L
load_nifti_file() (in module deepreg.dataset.loader.nifti_loader)
local_displacement_energy() (in module deepreg.model.loss.deform)
local_normalized_cross_correlation() (in module deepreg.model.loss.image)
LocalNet (class in deepreg.model.backbone.local_net)
LocalNetResidual3dBlock (class in deepreg.model.layer)
LocalNetUpSampleResnetBlock (class in deepreg.model.layer)
M
main() (in module deepreg.predict)
(in module deepreg.train)
(in module deepreg.warp)
MaxPool3d (class in deepreg.model.layer)
module
deepreg.dataset.loader.grouped_loader
deepreg.dataset.loader.h5_loader
deepreg.dataset.loader.nifti_loader
deepreg.dataset.loader.paired_loader
deepreg.dataset.loader.unpaired_loader
deepreg.model.layer_util
deepreg.model.loss.deform
deepreg.model.loss.image
deepreg.model.loss.label
deepreg.model.network.affine
deepreg.model.network.build
deepreg.model.network.cond
deepreg.model.network.ddf_dvf
deepreg.model.network.util
deepreg.model.optimizer
deepreg.predict
deepreg.train
deepreg.warp
multi_scale_loss() (in module deepreg.model.loss.label)
N
NiftiFileLoader (class in deepreg.dataset.loader.nifti_loader)
Norm (class in deepreg.model.layer)
P
PairedDataLoader (class in deepreg.dataset.loader.paired_loader)
predict() (in module deepreg.predict)
predict_on_dataset() (in module deepreg.predict)
pyramid_combination() (in module deepreg.model.layer_util)
R
random_transform_generator() (in module deepreg.model.layer_util)
resample() (in module deepreg.model.layer_util)
Residual3dBlock (class in deepreg.model.layer)
resize3d() (in module deepreg.model.layer_util)
S
sample_index_generator() (deepreg.dataset.loader.grouped_loader.GroupedDataLoader method)
(deepreg.dataset.loader.paired_loader.PairedDataLoader method)
(deepreg.dataset.loader.unpaired_loader.UnpairedDataLoader method)
separable_filter3d() (in module deepreg.model.loss.label)
set_data_structure() (deepreg.dataset.loader.h5_loader.H5FileLoader method)
(deepreg.dataset.loader.interface.FileLoader method)
(deepreg.dataset.loader.nifti_loader.NiftiFileLoader method)
set_group_structure() (deepreg.dataset.loader.h5_loader.H5FileLoader method)
(deepreg.dataset.loader.interface.FileLoader method)
(deepreg.dataset.loader.nifti_loader.NiftiFileLoader method)
single_scale_loss() (in module deepreg.model.loss.label)
squared_error() (in module deepreg.model.loss.label)
ssd() (in module deepreg.model.loss.image)
T
train() (in module deepreg.train)
U
UNet (class in deepreg.model.backbone.u_net)
UnpairedDataLoader (class in deepreg.dataset.loader.unpaired_loader)
UpSampleResnetBlock (class in deepreg.model.layer)
V
validate_data_files() (deepreg.dataset.loader.grouped_loader.GroupedDataLoader method)
(deepreg.dataset.loader.paired_loader.PairedDataLoader method)
(deepreg.dataset.loader.unpaired_loader.UnpairedDataLoader method)
W
warp() (in module deepreg.warp)
warp_grid() (in module deepreg.model.layer_util)
warp_image_ddf() (in module deepreg.model.layer_util)
Warping (class in deepreg.model.layer)
weighted_binary_cross_entropy() (in module deepreg.model.loss.label)
Read the Docs
v: v0.1.0b1
Versions
latest
develop
416-450-471-update-documentation
v0.1.0b1
Downloads
On Read the Docs
Project Home
Builds